Software is a big part of most current EME stations. The JT65 Protocol, which was created by Joe Taylor, K1JT, has revolutionized EME operations. It has made it possible for modest single and two yagi stations to have fun with EME…
Source: EME Station 2.0 Part 12 – Station Software
Operations using EME or Moonbounce communications is all about software. Every station’s software architecture and configuration is a little different.

We recently put together our software suite for our new 2m EME station. Our setup features multiple JT65b digital decoders, automatic tracking of the Moon, computer logging, and some useful web-based tools that make finding QSOs easier.

Our Phase 1 station configuration is mostly about integrating all of the components in our setup, sorting out operational issues, and learning to use all of the new software and hardware in our new Station.

Our primary software application is MAP65. This program can decode all of the signals on a given band at the same time. This is very useful during an EME Contest and for finding contacts during day-to-day operations.
You can read all about our software setup for our station via the link above.
Fred, AB1OC